Release 2018-09-10 ================== - Fixed HumanProteinAtlas experiment types Release 2018-08-30 ================== - Fixed Uniprot and BioGRID mapping parsers - Fixed HumanProteinAtlas localization parser - Fixed BioGRID interaction parser Release 2018-07-25 ================== The changes below made it possible to extend ComPPI in an extent that it contains now more than twice the amount of interactions than before. The redesign of mappings resulted in ComPPI containing now really only primary IDs. - Updated download locations for source databases - Updated processing of downloaded files to suit new file names and extensions, changed broken mappings link to local - MINT input database removed - Updated interaction parsers to suit current source database formats: HPRD, IntAct, CCSB, MatrixDB - DroiD interaction parser rewritten to suit all-new format - Fixed HumanProteinAtlas localization parser, extended parsable localizations list - Extended PaGOSub localization parser - Fixed interspecie interaction exclusions in BioGRID and DIP interaction parsers - Reworked UniProtKB mapping hierarchy - Added maps containing the full list of primary UniProtKB IDs (as of July 2018) to map everything to SwissProt or TrEmbl primary IDs - Changed build order of database to speed up executions - Other small changes Release 2014-09-27 ================== - remaining secondary UniProt accessions are mapped to the corresponding primary IDs using the UniProt 2014_08 release - updated network visualization with toggle display function - interactors pages are accessible by primary protein name instead of ComPPI ID (protein_search/interactors/ -> protein_search/interactors/) Release 2014-09-19 ================== ComPPI version 1.1 - HomoMint input database has been removed (MINT as an input database contains it) - BaCelLo input database has been removed (not updated anymore, eSLDB as an input database contains it) - updated localization and interaction score optimization, evidence type weight values: experimental=.8, predicted=.7, unknown=.3 - cytoplasm major cellular component has been renamed to cytosol - GeneOntology IPI evidence was changed from experimental to predicted - new network visualization and export features on the Search page - help, tutorial and main page text updates - UniProt version is now included in the Help Release 2014-06-30 ================== ComPPI version 1.0 - updated localization and interaction score optimization, evidence type weight values: experimental=.7, unknown=.5, predicted=.5 - data overlap python script - generate egographs by the export python script - new protein search options on the website - help, tutorials and main page text updates - various bugfixes Release 2014-06-01 ================== First beta version of ComPPI.