P90916

Probable histone-binding protein lin-53    //   UniProt Profile 

Custom Settings: Use these controls to filter the data displayed on this page. The parameters apply to both the query protein and its interactors. Details







The (filtered) results are available for download, see the help for details. Download The Results

Species

 C. elegans

Number of Interactions

 10 / 11

Average Interaction Score

 0.788

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Nucleus Nucleus (GO:0005634) 1 Experimental: experimental eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 1 Experimental: inferred from direct assay GO PubMed 
Nucleus Nucleus (GO:0005634) 1 Predicted: PAML algorithm PA-GOSUB PubMed 
Nucleus Transcriptional repressor complex (GO:0017053) 1 Experimental: inferred from direct assay GO PubMed 
Nucleus DRM complex (GO:0070176) 1 Experimental: inferred from direct assay GO PubMed 
Nucleus Chromosome, centromeric region (GO:0000775) 1 Unknown: inferred from electronic annotation GO PubMed 

First-Neighbour Network Visualization

Toggle Display

The first-neighbour network shows the interaction map after the filtration (if there was any).
Edge-widths are proportional to the respective Interaction Score.


Interactions

All Details

P90916

Interaction Score
0.999

O17695

(UniProtKB/Swiss-Prot/P) Details

Histone deacetylase 1

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Cytosol Cytoplasm (GO:0005737) 0.96 Experimental: experimental eSLDB PubMed 
Cytosol Cytoplasm (GO:0005737) 0.96 Experimental: inferred from direct assay GO PubMed 
Nucleus Nucleus (GO:0005634) 1 Experimental: experimental eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 1 Experimental: inferred from direct assay GO PubMed 
Nucleus Nucleus (GO:0005634) 1 Predicted: PAML algorithm PA-GOSUB PubMed 
Nucleus Germ cell nucleus (GO:0043073) 1 Experimental: inferred from direct assay GO PubMed 
Nucleus NuRD complex (GO:0016581) 1 Predicted: inferred from physical interaction GO PubMed 
Nucleus Histone deacetylase complex (GO:0000118) 1 Predicted: inferred from physical interaction GO PubMed 

Interaction Source Database:

IntAct, BioGRID

Interaction Source Publication:

PubMed 

P90916

Interaction Score
0.998

Q95QD7

(UniProtKB/Swiss-Prot/P) Details

Protein lin-54

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Secretory-pathway Secretory pathway (GO:secretory_pathway) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Cytosol Cytoplasm (GO:0005737) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.998 Experimental: inferred from direct assay GO PubMed 
Nucleus DRM complex (GO:0070176) 0.998 Experimental: inferred from direct assay GO PubMed 
Nucleus Condensed nuclear chromosome (GO:0000794) 0.998 Experimental: inferred from direct assay GO PubMed 
Nucleus Autosome (GO:0030849) 0.998 Experimental: inferred from direct assay GO PubMed 

Interaction Source Database:

IntAct, DIP

Interaction Source Publication:

PubMed 

P90916

Interaction Score
0.937

Q21484

(UniProtKB/TrEmbl/P) Details

Histone AcetylTransferase

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Nucleus Nucleus (GO:0005634) 0.937 Predicted: PAML algorithm PA-GOSUB PubMed 
Nucleus Nuclear chromatin (GO:0000790) 0.937 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus Chromosome, telomeric region (GO:0000781) 0.937 Unknown: inferred from electronic annotation GO PubMed 
Membrane Integral to membrane (GO:0016021) 0.7 Predicted: SVM decision tree eSLDB PubMed 

Interaction Source Database:

IntAct, BioGRID, CCSB

Interaction Source Publication:

PubMed , PubMed , PubMed 

P90916

Interaction Score
0.86

Q23482

(UniProtKB/TrEmbl/P) Details

Uncharacterized protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Cytosol Cytoplasm (GO:0005737) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.86 Experimental: inferred from direct assay GO PubMed 
Nucleus Transcriptional repressor complex (GO:0017053) 0.86 Unknown: inferred from electronic annotation GO PubMed 

Interaction Source Database:

DIP, IntAct, BioGRID, CCSB

Interaction Source Publication:

PubMed , PubMed , PubMed , PubMed 

P90916

Interaction Score
0.8

G5EDT1

(UniProtKB/Swiss-Prot/P) Details

Retinoblastoma-like protein homolog lin-35

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Nucleus Nucleus (GO:0005634) 0.8 Experimental: inferred from direct assay GO PubMed 

Interaction Source Database:

BioGRID, IntAct

Interaction Source Publication:

PubMed 

P90916

Interaction Score
0.8

P30630

(UniProtKB/Swiss-Prot/P) Details

Protein lin-9

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Nucleus DRM complex (GO:0070176) 0.8 Experimental: inferred from direct assay GO PubMed 

Interaction Source Database:

DIP, IntAct

Interaction Source Publication:

PubMed 

P90916

Interaction Score
0.79

O61907

(UniProtKB/TrEmbl/P) Details

Uncharacterized protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Secretory-pathway Secretory pathway (GO:secretory_pathway) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.79 Unknown: inferred from electronic annotation GO PubMed 
Nucleus Nucleus (GO:0005634) 0.79 Predicted: PAML algorithm PA-GOSUB PubMed 

Interaction Source Database:

BioGRID, IntAct, CCSB

Interaction Source Publication:

PubMed , PubMed , PubMed 

P90916

Interaction Score
0.7

Q86S28

(UniProtKB/TrEmbl/P) Details

Uncharacterized protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Secretory-pathway Secretory pathway (GO:secretory_pathway) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.7 Predicted: PAML algorithm PA-GOSUB PubMed 

Interaction Source Database:

BioGRID, CCSB, IntAct

Interaction Source Publication:

PubMed , PubMed , PubMed 

P90916

Interaction Score
0.7

Q76NP4

(UniProtKB/TrEmbl/P) Details

Uncharacterized protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Mitochondrion Mitochondrion (GO:0005739) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.7 Predicted: PAML algorithm PA-GOSUB PubMed 

Interaction Source Database:

BioGRID, CCSB

Interaction Source Publication:

PubMed , PubMed 

P90916

Interaction Score
0.3

Q10120

(UniProtKB/Swiss-Prot/P) Details

Protein lin-52

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Nucleus DRM complex (GO:0070176) 0.3 Unknown: inferred from electronic annotation GO PubMed 

Interaction Source Database:

DIP, IntAct

Interaction Source Publication:

PubMed 

⇦ Back to the Search Page
⇦ Back to Starting Page

ComPPI is published in Nucleic Acids Research Database Issue 2015