Q23543

LSM Sm-like protein    //   UniProt Profile 

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Species

 C. elegans

Number of Interactions

 3 / 3

Average Interaction Score

 0.84

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Cytosol U6 snRNP (GO:0005688) 0.7 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus Nucleus (GO:0005634) 0.992 Predicted: PAML algorithm PA-GOSUB PubMed 
Nucleus U2-type prespliceosome (GO:0071004) 0.992 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus U12-type spliceosomal complex (GO:0005689) 0.992 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus Catalytic step 2 spliceosome (GO:0071013) 0.992 Predicted: inferred from biological aspect of ancestor GO PubMed 

First-Neighbour Network Visualization

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The first-neighbour network shows the interaction map after the filtration (if there was any).
Edge-widths are proportional to the respective Interaction Score.


Interactions

All Details

Q23543

Interaction Score
0.995

Q19952

(UniProtKB/Swiss-Prot/P) Details

Probable U6 snRNA-associated Sm-like protein LSm4

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Cytosol Cytoplasm (GO:0005737) 0.982 Experimental: inferred from direct assay GO PubMed 
Cytosol Cytoplasmic mRNA processing body (GO:0000932) 0.982 Predicted: inferred from biological aspect of ancestor GO PubMed 
Cytosol U6 snRNP (GO:0005688) 0.982 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus Nucleus (GO:0005634) 0.992 Experimental: experimental eSLDB PubMed 
Nucleus Nucleus (GO:0005634) 0.992 Experimental: inferred from direct assay GO PubMed 
Nucleus Nucleus (GO:0005634) 0.992 Predicted: PAML algorithm PA-GOSUB PubMed 
Nucleus Spliceosomal complex (GO:0005681) 0.992 Unknown: inferred from electronic annotation GO PubMed 

Interaction Source Database:

CCSB, IntAct

Interaction Source Publication:

PubMed , PubMed 

Q23543

Interaction Score
0.889

O18694

(UniProtKB/TrEmbl/P) Details

LSM Sm-like protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Secretory-pathway Secretory pathway (GO:secretory_pathway) 0.7 Predicted: SVM decision tree eSLDB PubMed 
Cytosol U4/U6 x U5 tri-snRNP complex (GO:0046540) 0.91 Predicted: inferred from biological aspect of ancestor GO PubMed 
Cytosol U6 snRNP (GO:0005688) 0.91 Predicted: inferred from biological aspect of ancestor GO PubMed 
Nucleus Nucleus (GO:0005634) 0.7 Predicted: PAML algorithm PA-GOSUB PubMed 

Interaction Source Database:

CCSB, IntAct

Interaction Source Publication:

PubMed , PubMed 

Q23543

Interaction Score
0.637

O18246

(UniProtKB/TrEmbl/P) Details

Uncharacterized protein

Localizations:

Major Localization Minor Localization Localization Score Experiment Type Source Database PubMed ID
Cytosol Cytoplasm (GO:0005737) 0.91 Predicted: inferred from biological aspect of ancestor GO PubMed 
Cytosol Cytoplasm (GO:0005737) 0.91 Predicted: PAML algorithm PA-GOSUB PubMed 

Interaction Source Database:

CCSB, IntAct

Interaction Source Publication:

PubMed 

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ComPPI is published in Nucleic Acids Research Database Issue 2015